I asked via my ticket, but I got a pretty general answer. Not a direct quote: Engineering implemented some back-end changes which inadvertently irritated SAML. The changes were backed out, which resolved the problem.
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If voip is in the autovpn tunnel then no. If voip is using the local internet then you can try request a separate firewall config for wan2 at support. For example https://community.meraki.com/t5/Security-SD-WAN/MX64-Allow-only-Office-365-when-using-WAN-2-Fail-over/m-p/30918
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