I got word from the low voltage team that they are only setting up 2 IDFs (although there are 3 floors) - Basement and 2nd Floor. This changes my design... I am going to Stack the MS225-48LP switches (1 stack per floor)... I am also installing some MS350-24X for the mGig ports for MR56 WAP uplinks - these will be a separate stack per floor... Since 2 separate switches can be directly connected to the MX with no STP issues, maybe I will go with connecting a core MS350-24X and a core MS225-48LP to the MX... I will test that out first... but overall, I may just go the easier route. Thank you all for your input - you all really helped me out.
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