The devices are supervised, the Meraki MDM server is linked to DEP, and the devices are assigned to that MDM server. But somewhere along the line they became unmanaged en masse, and apps that were deployed via Meraki disappeared because at the time they were set to uninstall if the management profile was removed. The management profile was installed when the iPads were prepared using Apple Configurator. What I don't understand is how it is possible for the management profile, which was password protected, to simply disappear on multiple iPads, forcing me to either manually reapply the profile or take them through the prepare process again.
http://www.sohotech.co.nz/software/cisco-meraki-deleting-ipad-profile-automatically/
https://community.spiceworks.com/topic/1265763-meraki-mdm-why-is-it-automatically-removing-profiles-...
https://community.meraki.com/t5/Endpoint-Management-Systems/Problems-re-installing-profile-on-iPad/t...
The first link does describe restoring the iPad's firmware using DFU mode. Which could work if I do it... to all one hundred iPads affected... This issue really kind of defeats the purpose of having an MDM.
The second link mentions looking at the change log. I see some entries mentioning that the profile has been removed, but it doesn't seem to describe how many devices have been affected, and doesn't account for the most recent profile removals.