We've had this problem recently too. I opened a case with Meraki support. At first they said it was the code rev on my MX and were going to back rev it. A second case of this popped up and I noticed several of the sites in our Org were having the same issue. I called and spoke with a Meraki engineer. They looked and found the backend Meraki VPN Registry server(s) were overloaded. He had to manually push our Org to use different server(s). That cleared up the issue. He said there would have to be another re-balance done by Meraki support 6 hours after the actions he took. So, short answer, call Meraki support if you see this in the log files.
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