Sorry, but I didn't quite understand your question.
Like this ? "I'm not sure if I still need to add the Meraki ports in the VPN firewall or in the firewall for Internet traffic"
Can you contextualize it a little better?
I am not a Cisco Meraki employee. My suggestions are based on documentation of Meraki best practices and day-to-day experience.
Please, if this post was useful, leave your kudos and mark it as solved.