That's OK, as long as both are selected it will facilitate the format / standards selected at the Meraki end. So if IKEv1 and IKEv2 are ticked at the AWS end and IKEv2 is selected at the Meraki end then your peer connection will run on IKEv2. Note that any changes made at the AWS end take a good 5 - 10 minutes to fully register.