I can think of two possibilities. Instead of turning this site into a full AutoVPN hub, you could either convert it to a spoke or set up a non-Meraki VPN peer.
That way, it won't be part of the hub-to-hub mesh, but it can still connect to specific targets (like partner networks or isolated branches).
Or, you could set it up as a spoke, selecting only the hubs you want it to connect to. This breaks the mesh laterally, but keeps the rest of the hubs in the mesh.
I am not a Cisco Meraki employee. My suggestions are based on documentation of Meraki best practices and day-to-day experience.
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