Hi @Kent.
If you had engaged me - I think I would be recommending the user of Cisco Enterprise kit for your job. I have the feeling that aspects of public safety may be involved, and for me that raises the bar on the design being super robust and to handle a greater range of natural and unnatural disasters than a normal "corporate" solution might require.
However, lets continue along the Meraki vein.
The first thing to note is you are using the Microwave links for layer 2 extension and that Meraki AutoVPN is a layer 3 technology (meaning AutoVPN would require a different subnet at each site). So we have an issue there.
So accepting that limitation I would be using more than one technology.
First, I would use LACP and bond your two Microwave links together. If you were using a Cisco Enterprise switch I would recommend LACP "fastrate" which would allow sub-second failover between the Microwave links. Meraki doesn't have this feature (I have asked for it so many times ...).
I don't know the answer for sure but I would expect the LACP hello time to be 30s, and that you would have to loose three of these before declaring a microwave link down, so the failover time would probably be 90s. These are "standard" times - I'm not sure what Meraki MS uses - but they are probably the standard values.
You could use an existing core switch for this, or you could put in a little pair MS220-8 switches. Personally I would probably run each microwave link into a switch stack, with each link plugged into a different switch.
So that is the best I can think of to manage the layer 2 side. Now onto layer 3.
You would obviously run an Internet circuit into the MX at each site. Yes you can plug in an LTE device as well for failover. You could also run a transit VLAN between the two sites which is only used to connect the MX's, and you could run AutoVPN over both sets of links (there is an extra caveat here, but lets put that aside for the moment). You could also use simple tracked routes with AutoVPN failover. NOTE this will only provide redundant access to layer 3 domains at each site - basically to VLANs you are not extending over the microwave links. This scenario is discussed in this article:
https://documentation.meraki.com/MX-Z/Deployment_Guides/MPLS_Failover_to_Meraki_Auto_VPN
@Kent I would encourage you to engage with a local Cisco partner on your solution. I get the impression that your solution may involve aspects of public safety, so it is really important to get the right design. Hopefully my comments have given you more ideas to think about and how they might be incorporated into your solution.