I believe you have two options:
1) you could start with adding static routes for each branch pointing to the LAN interface of the old org Hub MX. And then when you move a branch to new org, first delete the static on old org and then the route should come in via new org AutoVPN.
2) you could make a summary route that contains all your branches on new org pointing to MX in old org hub. And then just add branches with a more specific mask. I'm not sure this would present an error. It surely will give you a warning to confirm at least.