Documentation states the following: "Clients will send DNS requests to the LAN interface of the MX, which will then proxy those requests to the DNS server(s) configured for its primary Internet uplink."
So, unless you set WAN 2 as the primary uplink then clients using a flow preference to use WAN 2 will actually be using WAN 1 DNS.
Alternatively, you can change DHCP settings and set your own preferred DNS servers to the clients (e.g. Google or Umbrella), rather than using the configured uplink ones.