Sounds like you need to update your routing design. Once those remote sites are connected via VPN, that prefix should then be listed as reachable via the MX, not the previously used router. Of course, you could weight routes to fall back to the legacy router if the VPN goes down. But there should be no reason you have to live with the asymmetry as a normal condition.
Another possibility to consider is whether the legacy WAN links could be supported on the MX. If so, you could leverage the various Meraki SD-WAN capabilities such as policy based routing to then use both routes for different applications. But this raises additional questions around why you would be in a scenario of having two VPN links and a traditional WAN link to field locations. I'm hoping once you complete a PoC with the Meraki gear you will actually be simplifying, not complicating your design 🙂